3D structure

PDB id
6WNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
6WNW|1|4|A|1174
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WNW_110 not in the Motif Atlas
Geometric match to IL_4V9F_042
Geometric discrepancy: 0.2975
The information below is about IL_4V9F_042
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6WNW|1|4|C|1171
6WNW|1|4|C|1172
6WNW|1|4|C|1173
6WNW|1|4|A|1174
6WNW|1|4|G|1175
6WNW|1|4|A|1176
6WNW|1|4|C|1177
6WNW|1|4|A|1178
6WNW|1|4|G|1179
*
6WNW|1|4|U|1236
6WNW|1|4|C|1237
6WNW|1|4|G|1238
6WNW|1|4|A|1239
6WNW|1|4|G|1240

Current chains

Chain 4
23s-5s joint ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L36
Chain f
50S ribosomal protein L6
Chain h
50S ribosomal protein L10

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2769 s