IL_6WNW_115

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6WNW|1|4|C|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_115 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.0952

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6WNW|1|4|C|1336
6WNW|1|4|U|1337
6WNW|1|4|G|1338
6WNW|1|4|C|1339
6WNW|1|4|G|1340
6WNW|1|4|A|1341
6WNW|1|4|A|1342
6WNW|1|4|G|1343
*
6WNW|1|4|U|1362
6WNW|1|4|G|1363
6WNW|1|4|G|1364
6WNW|1|4|A|1365
6WNW|1|4|G|1366

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20