IL_6WNW_127

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_127 not in the Motif Atlas

Geometric match to IL_5J7L_300

Geometric discrepancy: 0.1106

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6WNW|1|4|U|1602
6WNW|1|4|G|1603
6WNW|1|4|U|1604
6WNW|1|4|A|1605
6WNW|1|4|G|1606
*
6WNW|1|4|U|1641
6WNW|1|4|G|1642
6WNW|1|4|A|1643
6WNW|1|4|G|1644
6WNW|1|4|G|1645

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains