IL_6WNW_130

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_130 not in the Motif Atlas

Geometric match to IL_5J7L_303

Geometric discrepancy: 0.1409

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6WNW|1|4|C|1654
6WNW|1|4|G|1655
6WNW|1|4|A|1656
6WNW|1|4|G|1657
*
6WNW|1|4|U|1670
6WNW|1|4|G|1671
6WNW|1|4|A|1672
6WNW|1|4|A|1673
6WNW|1|4|G|1674

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains