IL_6WNW_186

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_186 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0717

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6WNW|1|4|G|1794
6WNW|1|4|G|1795
6WNW|1|4|A|1796
6WNW|1|4|A|1797
6WNW|1|4|C|1798
6WNW|1|4|U|1799
6WNW|1|4|A|1800
6WNW|1|4|G|1801
6WNW|1|4|G|1802
*
6WNW|1|4|C|2118
6WNW|1|4|U|2119
6WNW|1|4|G|2120
6WNW|1|4|U|2121
6WNW|1|4|C|2122

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14