IL_6WOO_010

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_010 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1136

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6WOO|1|2|U|116
6WOO|1|2|U|117
6WOO|1|2|A|118
6WOO|1|2|U|119
6WOO|1|2|U|120
6WOO|1|2|U|121
*
6WOO|1|2|A|294
6WOO|1|2|U|295
6WOO|1|2|U|296
6WOO|1|2|C|297
6WOO|1|2|A|298

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

eS8