IL_6WOO_013

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

6WOO|1|2|U|259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_013 not in the Motif Atlas

Homologous match to IL_4V88_397

Geometric discrepancy: 0.1981

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6WOO|1|2|G|203
6WOO|1|2|U|204
6WOO|1|2|A|205
*
6WOO|1|2|U|258
6WOO|1|2|U|259
6WOO|1|2|U|260
6WOO|1|2|U|261
6WOO|1|2|C|262

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

eS8