IL_6WOO_019

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_019 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2186

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6WOO|1|2|U|317
6WOO|1|2|U|318
6WOO|1|2|U|319
6WOO|1|2|C|320
6WOO|1|2|G|321
6WOO|1|2|A|322
*
6WOO|1|2|U|344
6WOO|1|2|G|345

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain II

eS8

Chain LL

uS17

Chain R

eL19