IL_6WOO_026

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAU*AAUU

Length

7 nucleotides

Bulged bases

6WOO|1|2|A|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_026 not in the Motif Atlas

Geometric match to IL_5AOX_001

Geometric discrepancy: 0.2516

The information below is about IL_5AOX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6WOO|1|2|G|479
6WOO|1|2|A|480
6WOO|1|2|U|481
*
6WOO|1|2|A|504
6WOO|1|2|A|505
6WOO|1|2|U|506
6WOO|1|2|U|507

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain ee

eS30