IL_6WOO_040

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6WOO|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_040 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1125

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6WOO|1|2|G|867
6WOO|1|2|G|868
6WOO|1|2|A|869
6WOO|1|2|C|870
*
6WOO|1|2|G|957
6WOO|1|2|U|958
6WOO|1|2|U|959
6WOO|1|2|U|960
6WOO|1|2|U|961

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain NN

uS15

Chain bb

eS27