IL_6WOO_044

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6WOO|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_044 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.3751

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6WOO|1|2|U|893
6WOO|1|2|U|894
6WOO|1|2|G|895
6WOO|1|2|U|896
6WOO|1|2|C|897
6WOO|1|2|A|898
6WOO|1|2|G|899
*
6WOO|1|2|C|910
6WOO|1|2|U|911
6WOO|1|2|U|912
6WOO|1|2|G|913
6WOO|1|2|G|914
6WOO|1|2|A|915
6WOO|1|2|U|916
6WOO|1|2|U|917
6WOO|1|2|U|918
6WOO|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

eS1

Chain OO

uS11