IL_6WOO_045

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGGAUCGAAG*CGUAGUCU

Length

19 nucleotides

Bulged bases

6WOO|1|2|U|1015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|2|G|984
6WOO|1|2|G|985
6WOO|1|2|G|986
6WOO|1|2|G|987
6WOO|1|2|A|988
6WOO|1|2|U|989
6WOO|1|2|C|990
6WOO|1|2|G|991
6WOO|1|2|A|992
6WOO|1|2|A|993
6WOO|1|2|G|994
*
6WOO|1|2|C|1010
6WOO|1|2|G|1011
6WOO|1|2|U|1012
6WOO|1|2|A|1013
6WOO|1|2|G|1014
6WOO|1|2|U|1015
6WOO|1|2|C|1016
6WOO|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain A

uL2

Chain NN

uS15

Chain OO

uS11

Chain aa

eS26

Chain p

eL43