IL_6WOO_048

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_048 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.3036

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6WOO|1|2|A|1039
6WOO|1|2|G|1040
*
6WOO|1|2|C|1078
6WOO|1|2|U|1079
6WOO|1|2|U|1080

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

uS2

Chain VV

eS21

Chain WW

uS8

Chain aa

eS26

Chain bb

eS27