IL_6WOO_064

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_064 not in the Motif Atlas

Geometric match to IL_5TBW_127

Geometric discrepancy: 0.2342

The information below is about IL_5TBW_127

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6WOO|1|2|U|1290
6WOO|1|2|G|1291
6WOO|1|2|G|1292
*
6WOO|1|2|C|1323
6WOO|1|2|G|1324
6WOO|1|2|A|1325

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

uS2

Chain CC

uS5

Chain DD

uS3

Chain RR

eS17