IL_6WOO_066

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

6WOO|1|2|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_066 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.2084

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6WOO|1|2|C|1339
6WOO|1|2|U|1340
6WOO|1|2|A|1341
6WOO|1|2|C|1342
*
6WOO|1|2|G|1383
6WOO|1|2|A|1384
6WOO|1|2|G|1385

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain QQ

uS19

Chain RR

eS17

Chain UU

uS10

Chain gg

RACK1