IL_6WOO_073

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_073 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1601

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WOO|1|2|G|1540
6WOO|1|2|G|1541
6WOO|1|2|G|1542
6WOO|1|2|A|1543
6WOO|1|2|U|1544
6WOO|1|2|A|1545
*
6WOO|1|2|U|1566
6WOO|1|2|U|1567
6WOO|1|2|C|1568
6WOO|1|2|A|1569
6WOO|1|2|A|1570
6WOO|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain SS

uS13

Chain TT

eS19