3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WOO_076 not in the Motif Atlas
Geometric match to IL_5MWI_007
Geometric discrepancy: 0.1328
The information below is about IL_5MWI_007
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
259

Unit IDs

6WOO|1|2|G|1642
6WOO|1|2|U|1643
6WOO|1|2|C|1644
*
6WOO|1|2|G|1757
6WOO|1|2|U|1758
6WOO|1|2|C|1759

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain n
eL41

Coloring options:


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