IL_6WOO_077

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_077 not in the Motif Atlas

Homologous match to IL_8C3A_473

Geometric discrepancy: 0.5159

The information below is about IL_8C3A_473

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6WOO|1|2|C|1644
6WOO|1|2|G|1645
6WOO|1|2|C|1646
6WOO|1|2|U|1647
*
6WOO|1|2|A|1753
6WOO|1|2|A|1754
6WOO|1|2|A|1755
6WOO|1|2|A|1756
6WOO|1|2|G|1757

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain XX

uS12

Chain n

eL41