IL_6WOO_089
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 6WOO|1|5|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_089 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0671
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6WOO|1|5|C|31
6WOO|1|5|U|32
6WOO|1|5|G|33
6WOO|1|5|A|34
6WOO|1|5|A|35
6WOO|1|5|C|36
6WOO|1|5|U|37
6WOO|1|5|U|38
*
6WOO|1|5|A|45
6WOO|1|5|U|46
6WOO|1|5|C|47
6WOO|1|5|A|48
6WOO|1|5|A|49
6WOO|1|5|U|50
6WOO|1|5|A|51
6WOO|1|5|A|52
6WOO|1|5|G|53
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain j
- eL37
- Chain o
- eL42
Coloring options: