IL_6WOO_091

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

6WOO|1|5|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_091 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1005

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6WOO|1|5|A|123
6WOO|1|5|U|124
*
6WOO|1|5|A|144
6WOO|1|5|G|145
6WOO|1|5|U|146
6WOO|1|5|U|147
6WOO|1|5|G|148
6WOO|1|5|U|149

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

eL8

Chain N

eL15