IL_6WOO_098
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6WOO|1|5|A|398, 6WOO|1|5|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_098 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1295
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6WOO|1|5|G|376
6WOO|1|5|A|377
6WOO|1|5|A|378
6WOO|1|5|C|379
*
6WOO|1|5|G|390
6WOO|1|5|A|391
6WOO|1|5|G|392
6WOO|1|5|U|393
6WOO|1|5|G|394
6WOO|1|5|A|395
6WOO|1|5|A|396
6WOO|1|5|A|397
6WOO|1|5|A|398
6WOO|1|5|A|399
6WOO|1|5|G|400
6WOO|1|5|U|401
6WOO|1|5|A|402
6WOO|1|5|C|403
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- uL22
- Chain Y
- uL24
- Chain l
- eL39
Coloring options: