IL_6WOO_099
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_099 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.0883
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6WOO|1|5|G|404
6WOO|1|5|U|405
6WOO|1|5|G|406
6WOO|1|5|A|407
6WOO|1|5|A|408
6WOO|1|5|A|409
6WOO|1|5|U|410
*
6WOO|1|8|A|13
6WOO|1|8|C|14
6WOO|1|8|G|15
6WOO|1|8|G|16
6WOO|1|8|A|17
6WOO|1|8|U|18
6WOO|1|8|C|19
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal rRNA
Nearby chains
- Chain C
- uL4
- Chain P
- uL22
- Chain e
- eL32
Coloring options: