IL_6WOO_101

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGACG*CAUAAUG

Length

13 nucleotides

Bulged bases

6WOO|1|5|A|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|5|C|435
6WOO|1|5|A|436
6WOO|1|5|G|437
6WOO|1|5|A|438
6WOO|1|5|C|439
6WOO|1|5|G|495
*
6WOO|1|5|C|618
6WOO|1|5|A|619
6WOO|1|5|U|620
6WOO|1|5|A|621
6WOO|1|5|A|622
6WOO|1|5|U|623
6WOO|1|5|G|624

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain E

eL6

Chain P

uL22

Chain e

eL32

Chain f

eL33