IL_6WOO_103
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6WOO|1|5|A|519, 6WOO|1|5|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_103 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.1448
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|G|517
6WOO|1|5|G|518
6WOO|1|5|A|519
6WOO|1|5|U|520
6WOO|1|5|A|521
6WOO|1|5|A|522
6WOO|1|5|A|523
6WOO|1|5|U|524
6WOO|1|5|C|525
*
6WOO|1|5|G|567
6WOO|1|5|G|568
6WOO|1|5|A|569
6WOO|1|5|A|570
6WOO|1|5|U|571
6WOO|1|5|A|572
6WOO|1|5|C|573
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain F
- uL30
- Chain M
- eL14
- Chain S
- eL20
Coloring options: