IL_6WOO_109

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

6WOO|1|5|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_109 not in the Motif Atlas

Homologous match to IL_5TBW_025

Geometric discrepancy: 0.124

The information below is about IL_5TBW_025

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6WOO|1|5|A|755
6WOO|1|5|U|756
*
6WOO|1|5|A|775
6WOO|1|5|U|776
6WOO|1|5|U|777

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain L

eL13

Chain Q

eL18

Chain b

eL29