IL_6WOO_110

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_110 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1575

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WOO|1|5|C|758
6WOO|1|5|U|759
6WOO|1|5|G|760
6WOO|1|5|A|761
6WOO|1|5|U|762
6WOO|1|5|G|763
*
6WOO|1|5|C|768
6WOO|1|5|G|769
6WOO|1|5|G|770
6WOO|1|5|A|771
6WOO|1|5|U|772
6WOO|1|5|G|773

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain L

eL13

Chain a

uL15

Chain o

eL42