IL_6WOO_113

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6WOO|1|5|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_113 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.1266

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6WOO|1|5|A|828
6WOO|1|5|U|829
*
6WOO|1|5|A|895
6WOO|1|5|A|896
6WOO|1|5|U|897

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

uL2

Chain g

eL34

Chain p

eL43