IL_6WOO_116

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_116 not in the Motif Atlas

Homologous match to IL_5TBW_031

Geometric discrepancy: 0.0943

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6WOO|1|5|G|869
6WOO|1|5|G|870
6WOO|1|5|U|871
6WOO|1|5|U|872
*
6WOO|1|5|A|888
6WOO|1|5|U|889
6WOO|1|5|C|890

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain j

eL37