IL_6WOO_121

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

6WOO|1|5|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_121 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.5955

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6WOO|1|5|C|977
6WOO|1|5|G|978
6WOO|1|5|U|979
6WOO|1|5|A|980
6WOO|1|5|U|981
6WOO|1|5|C|982
*
6WOO|1|5|G|1101
6WOO|1|5|A|1102
6WOO|1|5|A|1103
6WOO|1|5|G|1104

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain F

uL30

Chain Q

eL18

Chain b

eL29