IL_6WOO_127

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_127 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.105

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6WOO|1|5|A|1009
6WOO|1|5|G|1010
6WOO|1|5|A|1011
*
6WOO|1|5|U|1039
6WOO|1|5|A|1040
6WOO|1|5|U|1041

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain D

uL18

Chain I

uL16