IL_6WOO_168

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGACGC*GUAGACG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|5|C|1971
6WOO|1|5|A|1972
6WOO|1|5|G|1973
6WOO|1|5|A|1974
6WOO|1|5|C|1975
6WOO|1|5|G|1976
6WOO|1|5|C|1977
*
6WOO|1|5|G|2054
6WOO|1|5|U|2055
6WOO|1|5|A|2056
6WOO|1|5|G|2057
6WOO|1|5|A|2058
6WOO|1|5|C|2059
6WOO|1|5|G|2060

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain k

eL38