IL_6WOO_175

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCAAAGU*AACCAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|5|G|2210
6WOO|1|5|U|2211
6WOO|1|5|C|2212
6WOO|1|5|A|2213
6WOO|1|5|A|2214
6WOO|1|5|A|2215
6WOO|1|5|G|2216
6WOO|1|5|U|2217
*
6WOO|1|5|A|2228
6WOO|1|5|A|2229
6WOO|1|5|C|2230
6WOO|1|5|C|2231
6WOO|1|5|A|2232
6WOO|1|5|A|2233
6WOO|1|5|G|2234
6WOO|1|5|C|2235

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

uL2

Chain i

eL36

Chain o

eL42