IL_6WOO_176

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_176 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.1021

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6WOO|1|5|G|2276
6WOO|1|5|C|2277
*
6WOO|1|5|G|2307
6WOO|1|5|C|2308
6WOO|1|5|A|2309
6WOO|1|5|U|2310

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 1

eIF5B

Chain 3

Transfer RNA; tRNA

Chain n

eL41