IL_6WOO_182

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6WOO|1|5|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_182 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.0847

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6WOO|1|5|U|2423
6WOO|1|5|A|2424
6WOO|1|5|G|2425
*
6WOO|1|5|U|2604
6WOO|1|5|G|2605
6WOO|1|5|G|2606
6WOO|1|5|G|2607

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

eL15

Chain o

eL42