IL_6WOO_188
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_188 not in the Motif Atlas
- Homologous match to IL_8C3A_107
- Geometric discrepancy: 0.0951
- The information below is about IL_8C3A_107
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6WOO|1|5|G|2614
6WOO|1|5|G|2615
*
6WOO|1|5|C|2625
6WOO|1|5|A|2626
6WOO|1|5|C|2627
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain I
- uL16
- Chain T
- eL21
- Chain b
- eL29
- Chain o
- eL42
Coloring options: