IL_6WOO_195

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_195 not in the Motif Atlas

Geometric match to IL_5TBW_104

Geometric discrepancy: 0.1162

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6WOO|1|5|U|2826
6WOO|1|5|U|2827
6WOO|1|5|G|2828
*
6WOO|1|5|U|2862
6WOO|1|5|G|2863

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 1

eIF5B

Chain I

uL16