IL_6WOO_202

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

6WOO|1|5|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_202 not in the Motif Atlas

Homologous match to IL_5TBW_111

Geometric discrepancy: 0.1409

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6WOO|1|5|U|2891
6WOO|1|5|A|2892
*
6WOO|1|5|U|2909
6WOO|1|5|A|2910
6WOO|1|5|A|2911
6WOO|1|5|G|2912

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40