IL_6WOO_239

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGUUC*GGACCA

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_239 not in the Motif Atlas

Geometric match to IL_3D0M_003

Geometric discrepancy: 0.3902

The information below is about IL_3D0M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69986.1

Basepair signature

cWW-cHW-L-R-L-R-cWH-cWW

Number of instances in this motif group

1

Unit IDs

6WOO|1|2|U|822
6WOO|1|2|G|823
6WOO|1|2|G|824
6WOO|1|2|U|825
6WOO|1|2|U|826
6WOO|1|2|C|827
*
6WOO|1|2|G|845
6WOO|1|2|G|846
6WOO|1|2|A|847
6WOO|1|2|C|848
6WOO|1|2|C|849
6WOO|1|2|A|850

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain LL

uS17

Chain R

eL19