IL_6WOO_244

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

6WOO|1|2|U|1370, 6WOO|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_244 not in the Motif Atlas

Homologous match to IL_8P9A_446

Geometric discrepancy: 0.316

The information below is about IL_8P9A_446

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|2|G|1352
6WOO|1|2|U|1353
6WOO|1|2|G|1354
6WOO|1|2|C|1355
*
6WOO|1|2|G|1368
6WOO|1|2|U|1369
6WOO|1|2|U|1370
6WOO|1|2|A|1371
6WOO|1|2|U|1372
6WOO|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain QQ

uS19

Chain TT

eS19

Chain UU

uS10