IL_6WOO_245

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCCAGCGA*UUGUGAAACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|2|A|1479
6WOO|1|2|G|1480
6WOO|1|2|C|1481
6WOO|1|2|C|1482
6WOO|1|2|A|1483
6WOO|1|2|G|1484
6WOO|1|2|C|1485
6WOO|1|2|G|1486
6WOO|1|2|A|1487
*
6WOO|1|2|U|1519
6WOO|1|2|U|1520
6WOO|1|2|G|1521
6WOO|1|2|U|1522
6WOO|1|2|G|1523
6WOO|1|2|A|1524
6WOO|1|2|A|1525
6WOO|1|2|A|1526
6WOO|1|2|C|1527
6WOO|1|2|U|1528

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain FF

uS7

Chain QQ

uS19

Chain TT

eS19

Chain UU

uS10

Chain ZZ

eS25

Chain dd

uS14