IL_6WOO_249

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

6WOO|1|5|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_249 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.1248

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6WOO|1|5|U|1501
6WOO|1|5|C|1502
6WOO|1|5|A|1503
6WOO|1|5|A|1504
6WOO|1|5|C|1505
*
6WOO|1|5|G|1513
6WOO|1|5|G|1514
6WOO|1|5|A|1515

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39