IL_6WOO_251
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_251 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.064
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
6WOO|1|5|G|1898
6WOO|1|5|G|1899
6WOO|1|5|A|1900
6WOO|1|5|A|1901
6WOO|1|5|G|1902
6WOO|1|5|U|1903
6WOO|1|5|C|1904
6WOO|1|5|G|1905
6WOO|1|5|G|1906
*
6WOO|1|5|C|2333
6WOO|1|5|U|2334
6WOO|1|5|G|2335
6WOO|1|5|U|2336
6WOO|1|5|C|2337
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain V
- uL14
Coloring options: