IL_6WOO_261

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_261 not in the Motif Atlas

Geometric match to IL_8P9A_367

Geometric discrepancy: 0.3252

The information below is about IL_8P9A_367

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6WOO|1|2|U|699
6WOO|1|2|C|700
*
6WOO|1|2|G|738
6WOO|1|2|G|739
6WOO|1|2|A|740

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain HH

eS7

Chain LL

uS17