IL_6WQN_063

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQN_063 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.2333

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6WQN|1|1|A|1883
6WQN|1|1|G|1884
6WQN|1|1|G|1885
6WQN|1|1|A|1886
6WQN|1|1|G|1887
*
6WQN|1|1|C|1909
6WQN|1|1|G|1910
6WQN|1|1|A|1911
6WQN|1|1|A|1912
6WQN|1|1|U|1913

Current chains

Chain 1

23S rRNA

Nearby chains