IL_6WQQ_017

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6WQQ|1|1|G|846, 6WQQ|1|1|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_017 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.1197

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WQQ|1|1|G|719
6WQQ|1|1|A|720
6WQQ|1|1|A|721
6WQQ|1|1|A|722
6WQQ|1|1|C|723
*
6WQQ|1|1|G|844
6WQQ|1|1|A|845
6WQQ|1|1|G|846
6WQQ|1|1|A|847
6WQQ|1|1|U|848
6WQQ|1|1|A|849
6WQQ|1|1|G|850
6WQQ|1|1|C|851

Current chains

Chain 1

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L4

Chain X

50S ribosomal protein L15