IL_6WQQ_051

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAGG*CUGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_051 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.3049

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6WQQ|1|1|G|1518
6WQQ|1|1|U|1519
6WQQ|1|1|A|1520
6WQQ|1|1|A|1521
6WQQ|1|1|G|1522
6WQQ|1|1|G|1523
*
6WQQ|1|1|C|1557
6WQQ|1|1|U|1558
6WQQ|1|1|G|1559
6WQQ|1|1|A|1560
6WQQ|1|1|G|1561
6WQQ|1|1|C|1562

Current chains

Chain 1

23S rRNA

Nearby chains