IL_6WQQ_058

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

6WQQ|1|1|A|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_058 not in the Motif Atlas

Homologous match to IL_5J7L_312

Geometric discrepancy: 0.1728

The information below is about IL_5J7L_312

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6WQQ|1|1|G|1797
6WQQ|1|1|C|1798
*
6WQQ|1|1|G|2007
6WQQ|1|1|A|2008
6WQQ|1|1|U|2009

Current chains

Chain 1

23S rRNA

Nearby chains