IL_6WQQ_059

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

6WQQ|1|1|U|1828, 6WQQ|1|1|U|1843, 6WQQ|1|1|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_059 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1001

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6WQQ|1|1|U|1825
6WQQ|1|1|G|1826
6WQQ|1|1|C|1827
6WQQ|1|1|U|1828
6WQQ|1|1|A|1829
6WQQ|1|1|A|1830
6WQQ|1|1|A|1831
*
6WQQ|1|1|U|1840
6WQQ|1|1|G|1841
6WQQ|1|1|A|1842
6WQQ|1|1|U|1843
6WQQ|1|1|G|1844
6WQQ|1|1|U|1845
6WQQ|1|1|A|1846
6WQQ|1|1|U|1847
6WQQ|1|1|A|1848

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2