IL_6WQQ_073

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAUU*GCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_073 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2888

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6WQQ|1|1|A|2122
6WQQ|1|1|A|2123
6WQQ|1|1|U|2124
6WQQ|1|1|U|2125
*
6WQQ|1|1|G|2218
6WQQ|1|1|C|2219
6WQQ|1|1|U|2220
6WQQ|1|1|U|2221

Current chains

Chain 1

23S rRNA

Nearby chains