IL_6WQQ_080

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_080 not in the Motif Atlas

Homologous match to IL_7RQB_093

Geometric discrepancy: 0.1253

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

6WQQ|1|1|C|2483
6WQQ|1|1|U|2484
6WQQ|1|1|U|2485
6WQQ|1|1|A|2486
*
6WQQ|1|1|U|2520
6WQQ|1|1|G|2521
6WQQ|1|1|G|2522

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L16